If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 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'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ), 'gf_id' => 'HOM05D000777', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000777' ), 'data_identifier' => 'HOM05D000777', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000777', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12410' => 'bna', 'A06p19770' => 'bna', 'A06p29290' => 'bna', 'A07p13130' => 'bna', 'A07p13350' => 'bna', 'A07p13550' => 'bna', 'A07p29220' => 'bna', 'A07p40460' => 'bna', 'A08p27750' => 'bna', 'A08p27770' => 'bna', 'A09p40510' => 'bna', 'Aa31LG11G1020' => 'aar', 'Aa31LG4G16520' => 'aar', 'Aa31LG4G5030' => 'aar', 'Aa31LG5G16980' => 'aar', 'Aa31LG6G3090' => 'aar', 'Aa31LG7G8020' => 'aar', 'Aa31LG7G8300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.956' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1292' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5428' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.581' => 'aag', 'Actinidia01176' => 'ach', 'Actinidia01177' => 'ach', 'Actinidia04939' => 'ach', 'Actinidia07478' => 'ach', 'Actinidia14051' => 'ach', 'Actinidia19064' => 'ach', 'Actinidia31898' => 'ach', 'Actinidia34972' => 'ach', 'Ah.02g113000' => 'amhyb', 'Ah.02g129660' => 'amhyb', 'Ah.02g131870' => 'amhyb', 'Ah.07g203850' => 'amhyb', 'Ah.07g203860' => 'amhyb', 'Ah.09g232470' => 'amhyb', 'Ah.11g048910' => 'amhyb', 'AL1G38870' => 'aly', 'AL2G34680' => 'aly', 'AL3G17460' => 'aly', 'AL7G33080' => 'aly', 'AL8G39510' => 'aly', 'Aqoxy3G00829' => 'aox', 'Aqoxy3G03206' => 'aox', 'Aqoxy3G03395_Aqoxy3G03396' => 'aox', 'Aqoxy4G00017' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20UT51' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44U0BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46RCFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.609QDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XWV7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97GSLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A3CPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6ELU8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D20UA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IX3DUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KQ2Z9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3GSK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q47ZK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R990Z7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ92FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VN7VM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5CH90' => 'arhy', 'AT1G26810' => 'ath', 'AT1G27120' => 'ath', 'AT1G74800' => 'ath', 'AT3G06440' => 'ath', 'AT4G21060' => 'ath', 'AT5G62620' => 'ath', 'ATR0564G476' => 'atr', 'ATR0665G177' => 'atr', 'ATR0693G446' => 'atr', 'ATR1098G099' => 'atr', 'ATR1127G220' => 'atr', 'ATR1155G014' => 'atr', 'Atru.chr10.1051' => 'acertr', 'Atru.chr11.1778' => 'acertr', 'Atru.chr11.1885' => 'acertr', 'Atru.chr4.3077' => 'acertr', 'Atru.chr4.3078' => 'acertr', 'Atru.chr8.172' => 'acertr', 'Atru.chr9.2357' => 'acertr', 'AUR62002584' => 'cqu', 'AUR62002672' => 'cqu', 'AUR62005803' => 'cqu', 'AUR62008325' => 'cqu', 'AUR62021772' => 'cqu', 'AUR62026296' => 'cqu', 'AUR62026488' => 'cqu', 'AUR62030008' => 'cqu', 'AUR62030131' => 'cqu', 'AUR62032792' => 'cqu', 'BcaB01g00868' => 'bca', 'BcaB02g06967' => 'bca', 'BcaB02g09660' => 'bca', 'BcaB03g11977' => 'bca', 'BcaB03g14091' => 'bca', 'BcaB03g14112' => 'bca', 'BcaB04g21339' => 'bca', 'BcaB07g32388' => 'bca', 'BcaC01g01769' => 'bca', 'BcaC01g02495' => 'bca', 'BcaC04g23402' => 'bca', 'BcaC05g26342' => 'bca', 'BcaC06g35089' => 'bca', 'BcaC06g35119' => 'bca', 'BcaC07g39247' => 'bca', 'BcaC07g39249' => 'bca', 'BcaC08g46904' => 'bca', 'BcaC08g46915' => 'bca', 'BcaC08g46946' => 'bca', 'BcaC09g47895' => 'bca', 'BcaC09g51265' => 'bca', 'BcaNung03848' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00110' => 'bna', 'BolC1t01447H' => 'bol', 'BolC1t05620H' => 'bol', 'BolC3t18674H' => 'bol', 'BolC3t19507H' => 'bol', 'BolC5t31086H' => 'bol', 'BolC6t38427H' => 'bol', 'BolC6t39919H' => 'bol', 'BolC7t42479H' => 'bol', 'BolC7t42516H' => 'bol', 'BolC8t49890H' => 'bol', 'BolC9t53781H' => 'bol', 'BraA01t01187Z' => 'bra', 'BraA01t04437Z' => 'bra', 'BraA06t25056Z' => 'bra', 'BraA06t25885Z' => 'bra', 'BraA07t29084Z' => 'bra', 'BraA07t29107Z' => 'bra', 'BraA07t30561Z' => 'bra', 'BraA07t31589Z' => 'bra', 'BraA09t39547Z' => 'bra', 'C01p15000' => 'bna', 'C03p64180' => 'bna', 'C03p72110' => 'bna', 'C05p23670' => 'bna', 'C06p33110' => 'bna', 'C06p48830' => 'bna', 'C07p19620' => 'bna', 'C07p19970' => 'bna', 'C08p22540' => 'bna', 'C09p08690' => 'bna', 'CAN.G1127.1' => 'can', 'CAN.G27.50' => 'can', 'CAN.G305.49' => 'can', 'CAN.G36.20' => 'can', 'CAN.G36.21' => 'can', 'CAN.G628.55' => 'can', 'CAN.G660.30' => 'can', 'CAN.G736.3' => 'can', 'CAN.G999.16' => 'can', 'CANSAT01G1406' => 'cansat', 'CANSAT35G0985' => 'cansat', 'CANSAT64G1432' => 'cansat', 'CANSAT78G2311' => 'cansat', 'CANSAT80G1153' => 'cansat', 'CARHR024750' => 'chi', 'CARHR025120' => 'chi', 'CARHR068120' => 'chi', 'CARHR080970' => 'chi', 'CARHR156570' => 'chi', 'CARHR227640' => 'chi', 'CARHR276400' => 'chi', 'Carub.0001s2382' => 'cru', 'Carub.0001s2416' => 'cru', 'Carub.0002s2158' => 'cru', 'Carub.0003s0589' => 'cru', 'Carub.0007s2039' => 'cru', 'Carub.0008s2332' => 'cru', 'Ca_00514_v3' => 'car', 'Ca_04686_v3' => 'car', 'Ca_21398_v3' => 'car', 'Ca_21865_v3' => 'car', 'Ca_22833_v3' => 'car', 'Ca_22835_v3' => 'car', 'Ca_27056_v3' => 'car', 'CBR_g22043' => 'cbr', 'Cc03_g00410' => 'ccan', 'Cc04_g11000' => 'ccan', 'Cc04_g17240' => 'ccan', 'Cc09_g08720' => 'ccan', 'Cc11_g12920' => 'ccan', 'Cc11_g13750' => 'ccan', 'CDE02G2669' => 'cde', 'CDE02G4173' => 'cde', 'CDE05G1311' => 'cde', 'CDE05G2527' => 'cde', 'CDE06G2186' => 'cde', 'CDE06G2215' => 'cde', 'CDE08G0424' => 'cde', 'Cfa000894' => 'cfa', 'Cfa008974' => 'cfa', 'Cfa009054' => 'cfa', 'Cfa015699' => 'cfa', 'Cfa019026' => 'cfa', 'Ciclev10004515m.g' => 'ccl', 'Ciclev10011408m.g' => 'ccl', 'Ciclev10014475m.g' => 'ccl', 'Ciclev10019143m.g' => 'ccl', 'Ciclev10030897m.g' => 'ccl', 'Ciclev10030960m.g' => 'ccl', 'CiPaw.01G132800' => 'cil', 'CiPaw.05G134400' => 'cil', 'CiPaw.05G142500' => 'cil', 'CiPaw.06G079100' => 'cil', 'CiPaw.06G085900' => 'cil', 'CiPaw.09G119200' => 'cil', 'CiPaw.11G035000' => 'cil', 'CiPaw.12G020300' => 'cil', 'CiPaw.12G020600' => 'cil', 'ClCG01G014260' => 'cla', 'ClCG01G024940' => 'cla', 'ClCG05G006760' => 'cla', 'ClCG05G024230' => 'cla', 'ClCG05G024780' => 'cla', 'COL.COLO4_04931' => 'col', 'COL.COLO4_22958' => 'col', 'COL.COLO4_31004' => 'col', 'COL.COLO4_33404' => 'col', 'COL.COLO4_34527' => 'col', 'COL.COLO4_36233' => 'col', 'Cpa.g.sc121.25' => 'cpa', 'Cpa.g.sc128.35' => 'cpa', 'Cpa.g.sc146.63' => 'cpa', 'Cpa.g.sc17.61' => 'cpa', 'Cpa.g.sc5.296' => 'cpa', 'Cre12.g513000' => 'cre', 'CsaV3_1G008060' => 'csa', 'CsaV3_3G015390' => 'csa', 'CsaV3_5G032120' => 'csa', 'CsaV3_5G032750' => 'csa', 'CsaV3_6G052080' => 'csa', 'CSS0004065' => 'camsi', 'CSS0004514' => 'camsi', 'CSS0010438' => 'camsi', 'CSS0011296' => 'camsi', 'CSS0020107' => 'camsi', 'CSS0020224' => 'camsi', 'CSS0024105' => 'camsi', 'CSS0026653' => 'camsi', 'CSS0027446' => 'camsi', 'CSS0029684' => 'camsi', 'CSS0031548' => 'camsi', 'CSS0034087' => 'camsi', 'CSS0037490' => 'camsi', 'CSS0041066' => 'camsi', 'DCAR_002531' => 'dca', 'DCAR_003882' => 'dca', 'DCAR_011094' => 'dca', 'DCAR_021545' => 'dca', 'DCAR_021546' => 'dca', 'DCAR_024498' => 'dca', 'DCAR_026089' => 'dca', 'DCAR_026581' => 'dca', 'DCAR_027416' => 'dca', 'DCAR_031016' => 'dca', 'Dinv03924' => 'din', 'Dinv07981' => 'din', 'Dinv16653' => 'din', 'Dinv17914' => 'din', 'Dinv19898' => 'din', 'Dinv31154' => 'din', 'Dinv32209' => 'din', 'Dinv33766' => 'din', 'Dinv34150' => 'din', 'Duzib084G1156' => 'dzi', 'Duzib147G0387' => 'dzi', 'Duzib160G0327' => 'dzi', 'Duzib187G1716' => 'dzi', 'Duzib205G1265' => 'dzi', 'Duzib212G1030' => 'dzi', 'Duzib235G0728' => 'dzi', 'Duzib248G0330' => 'dzi', 'Duzib248G1515' => 'dzi', 'Duzib251G0265' => 'dzi', 'Duzib251G0819' => 'dzi', 'ECA232G1391' => 'eca', 'ECA233G2626' => 'eca', 'ECA233G5441' => 'eca', 'ECA236G1190' => 'eca', 'ECA238G1639' => 'eca', 'ECA247G2408' => 'eca', 'EL10Ac3g06286' => 'bvu', 'EL10Ac5g10892' => 'bvu', 'EL10Ac6g13120' => 'bvu', 'EL10Ac6g13216' => 'bvu', 'Eucgr.B03217' => 'egr', 'Eucgr.B03449' => 'egr', 'Eucgr.E02455' => 'egr', 'Eucgr.H04088' => 'egr', 'Eucgr.K02906' => 'egr', 'FAN02G2925' => 'fan', 'FAN04G1320' => 'fan', 'FAN07G1095' => 'fan', 'FAN07G1133' => 'fan', 'FAN08G1785' => 'fan', 'FAN11G3645' => 'fan', 'FAN12G1218' => 'fan', 'FAN12G3504' => 'fan', 'FAN13G0882' => 'fan', 'FAN16G1422' => 'fan', 'FAN17G1065' => 'fan', 'FAN17G1416' => 'fan', 'FAN17G1782' => 'fan', 'FAN18G0801' => 'fan', 'FAN21G0902' => 'fan', 'FAN22G1373' => 'fan', 'FAN22G2272' => 'fan', 'FAN25G2734' => 'fan', 'FvH4_3g04990' => 'fve', 'FvH4_4g20920' => 'fve', 'FvH4_4g31270' => 'fve', 'FvH4_4g35520' => 'fve', 'FvH4_5g15890' => 'fve', 'Glyma.01G039800' => 'gma', 'Glyma.01G048500' => 'gma', 'Glyma.02G025000' => 'gma', 'Glyma.02G108100' => 'gma', 'Glyma.04G176600' => 'gma', 'Glyma.05G031600' => 'gma', 'Glyma.05G144000' => 'gma', 'Glyma.06G188500' => 'gma', 'Glyma.08G100300' => 'gma', 'Glyma.08G294300' => 'gma', 'Glyma.13G221000' => 'gma', 'Glyma.15G091500' => 'gma', 'Glyma.17G038100' => 'gma', 'Glyma.17G095300' => 'gma', 'Glyma.18G128600' => 'gma', 'Gohir.A02G056700' => 'ghi', 'Gohir.A03G075800' => 'ghi', 'Gohir.A03G145200' => 'ghi', 'Gohir.A04G097200' => 'ghi', 'Gohir.A04G147300' => 'ghi', 'Gohir.A07G070700' => 'ghi', 'Gohir.A09G015900' => 'ghi', 'Gohir.A10G044200' => 'ghi', 'Gohir.A12G164600' => 'ghi', 'Gohir.D02G061900' => 'ghi', 'Gohir.D02G168600' => 'ghi', 'Gohir.D03G090100' => 'ghi', 'Gohir.D04G137000' => 'ghi', 'Gohir.D04G191700' => 'ghi', 'Gohir.D07G075200' => 'ghi', 'Gohir.D09G014600' => 'ghi', 'Gohir.D10G045400' => 'ghi', 'Gohir.D12G167700' => 'ghi', 'Gorai.001G079300' => 'gra', 'Gorai.003G071200' => 'gra', 'Gorai.005G069600' => 'gra', 'Gorai.005G189000' => 'gra', 'Gorai.006G016600' => 'gra', 'Gorai.008G180600' => 'gra', 'Gorai.011G048300' => 'gra', 'Gorai.012G121200' => 'gra', 'Gorai.012G187100' => 'gra', 'GSVIVG01008089001' => 'vvi', 'GSVIVG01011424001' => 'vvi', 'GSVIVG01017641001' => 'vvi', 'GSVIVG01019973001' => 'vvi', 'GSVIVG01020111001' => 'vvi', 'GSVIVG01021556001' => 'vvi', 'GSVIVG01021557001' => 'vvi', 'HanXRQChr02g0045381' => 'han', 'HanXRQChr04g0112081' => 'han', 'HanXRQChr05g0157421' => 'han', 'HanXRQChr08g0210921' => 'han', 'HanXRQChr08g0216911' => 'han', 'HanXRQChr09g0271421' => 'han', 'HanXRQChr10g0301781' => 'han', 'HanXRQChr10g0311831' => 'han', 'HanXRQChr10g0316921' => 'han', 'HanXRQChr15g0480831' => 'han', 'HanXRQChr15g0481611' => 'han', 'HanXRQChr16g0503411' => 'han', 'Haze_00823' => 'cav', 'Haze_05688' => 'cav', 'Haze_05692' => 'cav', 'Haze_05693' => 'cav', 'Haze_07401' => 'cav', 'Haze_12006' => 'cav', 'Haze_12087' => 'cav', 'Hma1.2p1_0002F.1_g003460' => 'hma', 'Hma1.2p1_0013F.1_g008110' => 'hma', 'Hma1.2p1_0289F.1_g114320' => 'hma', 'Hma1.2p1_0465F.1_g158490' => 'hma', 'Hma1.2p1_0586F.1_g183810' => 'hma', 'Hma1.2p1_0795F.1_g218900' => 'hma', 'Hma1.2p1_2055F.1_g312780' => 'hma', 'HPP92_000998' => 'vpl', 'HPP92_006025' => 'vpl', 'HPP92_010034' => 'vpl', 'HPP92_012526' => 'vpl', 'HPP92_014000' => 'vpl', 'HPP92_015249' => 'vpl', 'HPP92_016791' => 'vpl', 'HPP92_016833' => 'vpl', 'Hund02689' => 'sun', 'Hund05875' => 'sun', 'Hund09382' => 'sun', 'Hund12240' => 'sun', 'Hund17754' => 'sun', 'Hund25230' => 'sun', 'Lalb_Chr05g0217481' => 'lal', 'Lalb_Chr07g0181841' => 'lal', 'Lalb_Chr07g0182411' => 'lal', 'Lalb_Chr07g0187471' => 'lal', 'Lalb_Chr08g0236051' => 'lal', 'Lalb_Chr09g0326731' => 'lal', 'Lalb_Chr10g0098361' => 'lal', 'Lalb_Chr11g0071551' => 'lal', 'Lalb_Chr13g0294061' => 'lal', 'Lalb_Chr17g0340741' => 'lal', 'Lj1A1168G72' => 'lonja', 'Lj1g0026837' => 'lja', 'Lj2A323T71' => 'lonja', 'Lj2g0006195' => 'lja', 'Lj2g0027439' => 'lja', 'Lj3C837G9' => 'lonja', 'Lj4g0009975' => 'lja', 'Lj4g0020613' => 'lja', 'Lj4g0025372' => 'lja', 'Lj6A787T59' => 'lonja', 'Lj6g0007135' => 'lja', 'Lj9A457T109' => 'lonja', 'Lju41A14G27' => 'lonja', 'Lsat_1_v5_gn_1_11420' => 'lsa', 'Lsat_1_v5_gn_4_105621' => 'lsa', 'Lsat_1_v5_gn_5_18581' => 'lsa', 'Lsat_1_v5_gn_6_69101' => 'lsa', 'Lsat_1_v5_gn_7_29060' => 'lsa', 'Lsat_1_v5_gn_8_52660' => 'lsa', 'Manes.01G036300' => 'mes', 'Manes.01G091600' => 'mes', 'Manes.01G192900' => 'mes', 'Manes.03G209300' => 'mes', 'Manes.05G095000' => 'mes', 'Manes.05G102300' => 'mes', 'Manes.06G098200' => 'mes', 'Manes.14G072900' => 'mes', 'Manes.15G125500' => 'mes', 'Mapoly0012s0139' => 'mpo', 'Mapoly0012s0140' => 'mpo', 'MBI02_g15393_MAGBIO' => 'mbi', 'MBI02_g26595_MAGBIO' => 'mbi', 'MBI04_g18045_MAGBIO' => 'mbi', 'MBI18_g11216_MAGBIO' => 'mbi', 'MBI18_g40411_MAGBIO' => 'mbi', 'MD05G1278600' => 'mdo', 'MD06G1184800' => 'mdo', 'MD10G1257700' => 'mdo', 'MD13G1071300' => 'mdo', 'MD13G1082500' => 'mdo', 'MD13G1147200' => 'mdo', 'MD14G1190700' => 'mdo', 'MD16G1072100' => 'mdo', 'MD16G1081600' => 'mdo', 'Medtr2g018770' => 'mtr', 'Medtr4g107360' => 'mtr', 'Medtr4g123090' => 'mtr', 'Medtr5g037300' => 'mtr', 'Medtr5g041210' => 'mtr', 'Medtr8g061960' => 'mtr', 'MELO3C002223.2' => 'cme', 'MELO3C006736.2' => 'cme', 'MELO3C007101.2' => 'cme', 'MELO3C012047.2' => 'cme', 'MELO3C012101.2' => 'cme', 'Migut.D01886' => 'egut', 'Migut.I00108' => 'egut', 'Migut.L01283' => 'egut', 'Migut.L01284' => 'egut', 'Migut.L01364' => 'egut', 'Migut.M01865' => 'egut', 'Migut.N00018' => 'egut', 'MSTRG.16271' => 'ama', 'MSTRG.21748' => 'ama', 'MSTRG.23066' => 'ama', 'MSTRG.7520' => 'ama', 'MSTRG.7797' => 'ama', 'MSTRG.7842' => 'ama', 'MSTRG.9652' => 'ama', 'Nitab4.5_0000003g0100' => 'nta', 'Nitab4.5_0000040g0280' => 'nta', 'Nitab4.5_0000408g0020' => 'nta', 'Nitab4.5_0000642g0090' => 'nta', 'Nitab4.5_0000745g0190' => 'nta', 'Nitab4.5_0000758g0020' => 'nta', 'Nitab4.5_0000869g0060' => 'nta', 'Nitab4.5_0001726g0130' => 'nta', 'Nitab4.5_0003950g0030' => 'nta', 'Nitab4.5_0005451g0040' => 'nta', 'Nitab4.5_0006477g0010' => 'nta', 'Nitab4.5_0008312g0010' => 'nta', 'Nitab4.5_0009201g0020' => 'nta', 'Nn2g14534' => 'nnu', 'Nn3g17252' => 'nnu', 'Nn3g20317' => 'nnu', 'Nn4g22991' => 'nnu', 'Nn4g23183' => 'nnu', 'Nn4g25428' => 'nnu', 'Nn4g26642' => 'nnu', 'Nn5g28080' => 'nnu', 'Oeu005676.1' => 'oeu', 'Oeu005678.1' => 'oeu', 'Oeu005744.2' => 'oeu', 'Oeu014034.1' => 'oeu', 'Oeu014839.2' => 'oeu', 'Oeu015209.3' => 'oeu', 'Oeu020068.1' => 'oeu', 'Oeu022187.1' => 'oeu', 'Oeu028276.1' => 'oeu', 'Oeu031319.1' => 'oeu', 'Oeu035191.1' => 'oeu', 'Oeu035425.1' => 'oeu', 'Oeu057167.1' => 'oeu', 'Os01g0328900' => 'osa', 'Os02g0577300' => 'osa', 'Os03g0803600' => 'osa', 'Os03g0803900' => 'osa', 'Os06g0229200' => 'osa', 'Os07g0194800' => 'osa', 'Os07g0195200' => 'osa', 'Os08g0130900' => 'osa', 'Os12g0265400' => 'osa', 'Os12g0265600' => 'osa', 'Os12g0613850' => 'osa', 'Peaxi162Scf00009g00624' => 'pax', 'Peaxi162Scf00023g02310' => 'pax', 'Peaxi162Scf00154g00613' => 'pax', 'Peaxi162Scf00164g00525' => 'pax', 'Peaxi162Scf00209g00936' => 'pax', 'Peaxi162Scf00222g00418' => 'pax', 'Peaxi162Scf00689g00542' => 'pax', 'Peaxi162Scf00732g00453' => 'pax', 'PGR004G2834' => 'pgr', 'PGR031G3350' => 'pgr', 'PGR044G0362' => 'pgr', 'PGR102G0076' => 'pgr', 'PGSC0003DMG400018405' => 'stu', 'PGSC0003DMG400022627' => 'stu', 'PGSC0003DMG400024567' => 'stu', 'PGSC0003DMG400027154' => 'stu', 'PGSC0003DMG400033031' => 'stu', 'PGSC0003DMG401021097' => 'stu', 'Phvul.002G079900' => 'pvu', 'Phvul.002G084400' => 'pvu', 'Phvul.002G177500' => 'pvu', 'Phvul.003G071700' => 'pvu', 'Phvul.003G119000' => 'pvu', 'Phvul.003G194900' => 'pvu', 'Phvul.006G167800' => 'pvu', 'Phvul.009G183900' => 'pvu', 'Potri.006G011300' => 'ptr', 'Potri.008G086900' => 'ptr', 'Potri.010G040400' => 'ptr', 'Potri.010G151600' => 'ptr', 'Potri.010G168500' => 'ptr', 'Potri.012G072400' => 'ptr', 'Potri.015G067600' => 'ptr', 'Potri.016G013300' => 'ptr', 'Pp3c1_39880' => 'ppa', 'Pp3c22_470' => 'ppa', 'Pp3c2_8470' => 'ppa', 'Prupe.1G110700' => 'ppe', 'Prupe.1G264500' => 'ppe', 'Prupe.1G275500' => 'ppe', 'Prupe.4G086100' => 'ppe', 'Prupe.5G183600' => 'ppe', 'Psat0s2576g0080' => 'psa', 'Psat1g191480' => 'psa', 'Psat2g114960' => 'psa', 'Psat2g119240' => 'psa', 'Psat2g119400' => 'psa', 'Psat4g054440' => 'psa', 'Psat4g129120' => 'psa', 'Psat7g149160' => 'psa', 'PSO017G4610' => 'pso', 'PSO161G0054' => 'pso', 'PSO478G0571' => 'pso', 'PSO478G1603' => 'pso', 'PSO541G0827' => 'pso', 'PSO591G0241' => 'pso', 'PSO675G8706' => 'pso', 'PSO832G2642' => 'pso', 'QL03p066531' => 'qlo', 'QL03p068741' => 'qlo', 'QL05p054964' => 'qlo', 'QL06p013419' => 'qlo', 'QL10p014434' => 'qlo', 'RcHm_v2.0_Chr4g0426351' => 'rch', 'RcHm_v2.0_Chr4g0439721' => 'rch', 'RcHm_v2.0_Chr4g0445171' => 'rch', 'RcHm_v2.0_Chr5g0014981' => 'rch', 'RcHm_v2.0_Chr7g0180161' => 'rch', 'Rhsim04G0244700' => 'rsi', 'Rhsim08G0162800' => 'rsi', 'Rhsim12G0064000' => 'rsi', 'Rhsim12G0160200' => 'rsi', 'Rhsim13G0118400' => 'rsi', 'Sabra06G0008900' => 'sbr', 'Sabra10G0026700' => 'sbr', 'Sabra10G0116800' => 'sbr', 'Sabra10G0128300' => 'sbr', 'Sabra15G0092500' => 'sbr', 'Sabra16G0002100' => 'sbr', 'Sabra16G0015900' => 'sbr', 'SalBow2G1947' => 'sbo', 'SalBow2G1967' => 'sbo', 'SalBow5G3404' => 'sbo', 'SalBow7G1872' => 'sbo', 'SalBow8G5109' => 'sbo', 'SalBow8G5228' => 'sbo', 'Sc04g0002280' => 'sci', 'Sc04g0008060' => 'sci', 'Sc04g0008580' => 'sci', 'Sc04g0008590' => 'sci', 'Sc04g0008600' => 'sci', 'Sc05g0005960' => 'sci', 'Sc12g0006030' => 'sci', 'Sc12g0006040' => 'sci', 'Sc12g0006050' => 'sci', 'Sc12g0006060' => 'sci', 'Sc12g0006070' => 'sci', 'Sed0001126' => 'sed', 'Sed0009171' => 'sed', 'Sed0017162' => 'sed', 'Sed0019201' => 'sed', 'Sed0020134' => 'sed', 'Sed0023466' => 'sed', 'Sed0024023' => 'sed', 'Sed0026109' => 'sed', 'SEGI_03416' => 'sgi', 'SEGI_03882' => 'sgi', 'SEGI_12917' => 'sgi', 'SEGI_13038' => 'sgi', 'SEGI_13807' => 'sgi', 'SEGI_16612' => 'sgi', 'SEGI_25762' => 'sgi', 'SEGI_27864' => 'sgi', 'SGA_v2.0_scaffold114G31875' => 'sas', 'SGA_v2.0_scaffold196G40894' => 'sas', 'SGA_v2.0_scaffold1G00222' => 'sas', 'SGA_v2.0_scaffold227G43214' => 'sas', 'SGA_v2.0_scaffold235G43670' => 'sas', 'SGA_v2.0_scaffold302G47810' => 'sas', 'SGA_v2.0_scaffold3G01728' => 'sas', 'SGA_v2.0_scaffold56G20075' => 'sas', 'SGA_v2.0_scaffold8G04289' => 'sas', 'SMO143G0317' => 'smo', 'SMO339G0049' => 'smo', 'SMO356G0065' => 'smo', 'Solyc02g070400.3' => 'sly', 'Solyc03g113520.3' => 'sly', 'Solyc05g006680.4' => 'sly', 'Solyc05g007930.3' => 'sly', 'Solyc05g053280.3' => 'sly', 'Solyc06g071160.3' => 'sly', 'Sopen02g019480' => 'spe', 'Sopen03g032570' => 'spe', 'Sopen05g002630' => 'spe', 'Sopen05g003780' => 'spe', 'Sopen05g031790' => 'spe', 'Sopen06g027460' => 'spe', 'Sp1g21650' => 'spa', 'Sp1g21980' => 'spa', 'Sp2g25800' => 'spa', 'Sp3g05380' => 'spa', 'Sp5g14090' => 'spa', 'Sp5g29920' => 'spa', 'Sp7g19140' => 'spa', 'SpUn0103_0030' => 'spa', 'TAR362G0242' => 'tar', 'TAR622G1290' => 'tar', 'TAR627G0500' => 'tar', 'TAR629G1027' => 'tar', 'TAR629G1571' => 'tar', 'TAR629G3083' => 'tar', 'THA.LOC104808323' => 'tha', 'THA.LOC104812319' => 'tha', 'THA.LOC104818860' => 'tha', 'THA.LOC104821448' => 'tha', 'THA.LOC104822053' => 'tha', 'THA.LOC104822083' => 'tha', 'THA.LOC104822942' => 'tha', 'Thecc.02G235900' => 'tca', 'Thecc.02G345000' => 'tca', 'Thecc.03G075000' => 'tca', 'Thecc.04G083000' => 'tca', 'Thecc.04G308200' => 'tca', 'Thecc.06G143800' => 'tca', 'Thhalv10003755m.g' => 'esa', 'Thhalv10006986m.g' => 'esa', 'Thhalv10007037m.g' => 'esa', 'Thhalv10009623m.g' => 'esa', 'Thhalv10010954m.g' => 'esa', 'Thhalv10011115m.g' => 'esa', 'Thhalv10018236m.g' => 'esa', 'Thhalv10020308m.g' => 'esa', 'Thhalv10024584m.g' => 'esa', 'TPR.G26223' => 'tpr', 'TPR.G26723' => 'tpr', 'TPR.G38381' => 'tpr', 'TPR.G39205' => 'tpr', 'TPR.G40180' => 'tpr', 'TPR.G4229' => 'tpr', 'TWI31G0063' => 'twi', 'TWI53G0413' => 'twi', 'TWI53G2058' => 'twi', 'TWI73G1178' => 'twi', 'TWI75G0772' => 'twi', 'TWI79G0365' => 'twi', 'unitig_22.g6906' => 'ugi', 'unitig_750.g28493' => 'ugi', 'unitig_8.g2883' => 'ugi', 'vmacro01261' => 'vma', 'vmacro01262' => 'vma', 'vmacro03426' => 'vma', 'vmacro07982' => 'vma', 'vmacro14978' => 'vma', 'vmacro14979' => 'vma', 'vmacro14981' => 'vma', 'vmacro16575' => 'vma', 'vmacro19332' => 'vma', 'VMungo0251G2444' => 'vmu', 'VMungo0331G0124' => 'vmu', 'VMungo0540G2069' => 'vmu', 'VMungo1080G1511' => 'vmu', 'VMungo1215G0109' => 'vmu', 'VMungo1215G1733' => 'vmu', 'VMungo1215G1895' => 'vmu', 'VMungo1215G3067' => 'vmu', 'VMungo1309G2724' => 'vmu', 'Zm00001eb053620' => 'zma', 'Zm00001eb055000' => 'zma', 'Zm00001eb061350' => 'zma', 'Zm00001eb061380' => 'zma', 'Zm00001eb116340' => 'zma', 'Zm00001eb116370' => 'zma', 'Zm00001eb131080' => 'zma', 'Zm00001eb136160' => 'zma', 'Zm00001eb162040' => 'zma', 'Zm00001eb173170' => 'zma', 'Zm00001eb183150' => 'zma', 'Zm00001eb196700' => 'zma', 'Zm00001eb212660' => 'zma', 'Zm00001eb236570' => 'zma', 'Zm00001eb239440' => 'zma', 'Zm00001eb279720' => 'zma', 'Zm00001eb302010' => 'zma', 'Zm00001eb302720' => 'zma', 'Zm00001eb315800' => 'zma', 'Zm00001eb346010' => 'zma', 'Zm00001eb372330' => 'zma', 'Zm00001eb417070' => 'zma' ) $gf_id = 'HOM05D000777' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000777' ) $data_identifier = 'HOM05D000777' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 13, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 11, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 9, 'vmu' => (int) 9, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1